PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_9.294
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family FAR1
Protein Properties Length: 258aa    MW: 29834.7 Da    PI: 6.6345
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_9.294genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.85.7e-2677167190
                         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtk 80 
                                  +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++   ++++    + + tr gC+a++++ +++ gkw+vtk
  evm.model.supercontig_9.294  77 EFYATYGRRTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVYRKDR-VlpPPPITREGCQAMIRLALRDGGKWVVTK 157
                                  6******************************************99883333.234899************************ PP

                         FAR1  81 leleHnHela 90 
                                  + +eH+H+l+
  evm.model.supercontig_9.294 158 FIKEHSHKLM 167
                                  ********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-2377167IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDKHLGLGFD SDESDLDVQG ETYEEYGKVE VIPKNLEFSV GEDDEIEKRS PADLPENSEG  60
LEPCIGMVFN SRDEAREFYA TYGRRTGFTV RIHHNRRSRV NNQVIGQDFV CSKEGFRAKK  120
YVYRKDRVLP PPPITREGCQ AMIRLALRDG GKWVVTKFIK EHSHKLMSPN KVPWRGSGKQ  180
LLSEDEKDKR IRELSLKLYN ERQKCKRRCA AYEEQLNLIL KDLEKHTEHI SKKVADVVQS  240
IKAIEEEQSD DSDSEWM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369148.11e-150PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A067L5V81e-148A0A067L5V8_JATCU; Uncharacterized protein
STRINGPOPTR_0007s01940.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16529711
Representative plantOGRP8956514
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-41FAR1 family protein